The last thing that used this was removed in 7829cc1.

Change $anchored -> $orphan

Instead of setting $anchored=true on anchored annotations, set
$orphan=true on orphaned (i.e. unanchored) ones as we used to do.

Orphaned annotations are the exception: we don't show them, or if
show_unanchored_annotations is one then we show them with a warning.
It's simpler and less buggy to add $orphan=true onto the exceptional
annotations than to try to add $anchored=true onto all of the
unexceptional ones.

Fixes #2525.
Fixes #2541.

Fix document title and domain for local file PDF annotations

This fixes two issues on the annotation cards for some annotations:

1. If the annotated document has a non-http(s) URI (e.g. a local file://
   URI) then don't hyperlink the document's title to that URI

2. If the annotated document has no .domain value or its domain is the
   same as its title then don't display anything, instead of displaying
   a pair of emtpy braces ().

To fix this move the logic for formatting an annotation's document's title
and domain into AngularJS filters where it can be tested, instead of in
the template.

Use autoprefixer to add vendor prefixes to CSS

Translate annotation mapper

Hide unanchored warnings when not sidebar

Don't show the "We can't find the exact position of this annotation"
warnings on unanchored annotations when on the stream or individual
annotation pages - only show them in the sidebar.

Fix an issue where the group details container
could horizontally overflow the dropdown menu.

In IE 10 the text did not automatically wrap.

Add flex-shrink so that it will
collapse if necessary.

Card 87

In preparation for making some substantial changes to this piece of
code, I'm translating it to JS.

In preparation for making some substantial changes to this piece of
code, I'm translating it to JS.

Use postcss and the autoprefixer plugin to post-process
CSS to add vendor prefixes and remove use of compass
mixins which did the same thing.

This moves compatibility concerns out of our styling
and down to a post-processor whose options can be adjusted
as necessary and moves us a step towards removing the
build dependency on compass.

Looking at the generated output, it fixes several issues
where we were inconsistent about which prefixes were used.

Pyramid webassets does have an autoprefixer filter but
it was written for an older version of autoprefixer which
was a standalone tool rather than a postcss plugin. In future
this also paves the way to replacing the cleancss asset filter
with an optional step in the postcss-filter.js script.

Consolidate .gitignore files

Auto re-install Python, Node deps if out of date

Having these scattered about across the repository makes it hard to work
out where something is ignored, and most tools/editors that read
.gitignore files don't pay attention to those not in the repository
root.

T87 - Improve group scope dropdown ui

For IE 10 and Safari < 9 support, use prefixed flexbox.

For now, this duplicates the flexbox declarations as is
done in topbar.scss. I will look into using autoprefixer for
this separately.

Card 87

cf410d0 broke standalone annotation pages by changing
`threadRoot.children` from an array into a thread container.
Unsurprisingly, `children` is supposed to be an array.

 * Use the singular 'groupList' everywhere

 * Simplify the logic for stopping click propagation
   when toggling the selected group

 * Remove underscore prefix for Controller classes as per the PR
   discussion.

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Fix detection of PDF URIs

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*N.B.* This does not fix the underlying problem, but it does make it
possible to deploy the existing codebase without breaking everything in
production.

70c9b9b broke a number of features of the h client that were toggled on
for PDF documents, by renaming the Annotator PDF plugin from
`Annotator.Plugin.PDF` to `Annotator.Plugin.Pdf`.

While it's certainly an ugly side-effect of a straightforward rename,
the problem is that `Guest#getDocumentInfo` (to pick one example) used
`@plugins.PDF?` to determine whether to use the PDF metadata
(provided by the PDF.js `PDFViewerApplication`).

In the absence of PDF metadata, `getDocumentInfo` falls back to using
`window.location.href`, which explains the behaviour identified
in #2506.

Fixes #2506.

Add a test for the controller part of the <groups-list> directive.

We have a couple of different patterns for testing directive
controllers in the code, the approach taken here follows the privacy
dropdown's directive in simply exporting the controller's constructor
as a 'private' export and referencing it directly in the test.

 * Rename the exports in the 'directive/privacy' module for consistency

 * Restructure the 'New group' item to make icon
   and label align with the items above it

 * Make the whole 'New group' section clickable

 * Make 'New group' icon bold for visual consistency
   with other icons

 * Use the prerendered group URL from the API instead
   of generating it locally

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 * Use an element directive for <group-list> for
   consistency with the <privacy> directive and because
   the directive has its own template.

 * Use flexbox for easier layout of items in the groups
   dropdown list.

 * Update the hover and selection states of items in the dropdown
   list as per the mocks.

 * Add descriptive titles to all links in the list

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 * Use the brand color for hovered items,
   including selected items.

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Use nesting for readability.

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Use a light grey background.

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Add make target to run karma tests with auto-watch enabled

Show orphan annotations with a notice

The positions of the anchors are no longer needed.

This provides a convenient way to start Karma tests and auto-run
them when test files are changed.

Because the test files are incorporated into a Browserify bundle
by karma-browserify which watches files for changes via watchify(),
we can turn off Karma's own watching of the test files.

This fixes a problem where changing a test spec file would result
in Karma running all the tests twice, once after the test spec file
changed and then again afterwards due to the browserify bundle
being updated a second or two after the test spec file changes.

DRY in .editorconfig and add SCSS settings

cf410d0 broke thread sorting by interfering with the (admittedly
arcane) sort apparatus.

There is a scope.watch in the AppController which is responsible for
filling the `predicate` field of the `sort` object when the `name` field
changes. In order for this to work, the controllers in child scopes
(namely StreamController or WidgetController) need to modify the `name`
property of the `sort` object in the parent scope, via prototypal
inheritance, rather than replacing the entire `sort` object.

Clean up socket, threading, mapper with routing